Fottea 13(2): 227-233, 2013 | DOI: 10.5507/fot.2013.018

Chakia (cyanobacteria), a new heterocytous genus from Belizean marshes identified on the basis of the 16S rRNA gene.

Jaroslava Komárková1,2, Eliška Zapomělová1,3, Jiří Komárek2,3
1 Biology Centre AS CR, Institute of Hydrobiology, Na sádkách 7, 370 01 České Budějovice, Czech Republic
2 Botanical Institute AS CR, Dukelská 145, Třeboň, Czech Republic
3 University of South Bohemia in České Budějovice, Faculty of Science, Branišovská 31, 370 05 České Budějovice, Czech Republic

A new genus Chakia has been described on the basis of 16S rRNA sequences of four strains isolated from two localities in alkaline marshes in Belize (Central America). Characteristic morphological features of thalli both from natural environment and from cultivated strains were documented to complete the description of this new genus. The type strain has been named Ch.ciliosa sp. nov. Previous findings and up to now performed samplings and studies
of relative material have indicated that the occurrence of the genus in all Belizean alkaline marshes, Everglades (USA), Cuban and other tropical Caribbean alkaline marshes is evident or highly probable.

Keywords: Chakia, Scytonemataceae, central America, alkaline marshes, taxonomy, ecology

Received: March 2, 2013; Accepted: April 28, 2013; Published: September 1, 2013  Show citation

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Komárková, J., Zapomělová, E., & Komárek, J. (2013). Chakia (cyanobacteria), a new heterocytous genus from Belizean marshes identified on the basis of the 16S rRNA gene. Fottea13(2), 227-233. doi: 10.5507/fot.2013.018
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References

  1. Fiore, M. F.; Sant'Anna, C. L. & Azevedo, M.T. (2007): The cyanobacterial genus Brasilonema, gen. nov., a molecular and phenotypic evaluation. - Journal of Phycology 43: 789-798. Go to original source...
  2. Flechtner, V.R.; Boyer, S.L.; Johansen, J.R. & DeNoble, M.L. (2002): Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils. - Nova Hedwigia 74: 1-24. Go to original source...
  3. Guillard, R.R. & Lorenzen, C. (1972): Yellow green algae with chlorophyllide c. - Journal of Phycology 8: 10-14. Go to original source...
  4. Hall, T.A. (1999): BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. - Nucleic Acids Symposium Series 41: 95-98.
  5. Hoffmann, L.; Komárek, J. & Kaštovský, J. (2005): System of cyanoprokaryotes (cyanobacteria) - state in 2004. - Algological Studies 117: 95-115. Go to original source...
  6. Komárek J. (2013): Cyanoprokaryota -3. Teil/ 3rd Part: Nostocales. - In: Büdel, B.; Gärtner, G.; Krienitz, L. & Schagerl, M. (eds.): Süsswasserflora von Mitteleuropa 19/3. - Elsevier/Spektrum, Heidelberg (in press).
  7. Komárek, J. & Mareš, J. (2012): An update to modern taxonomy (2011) of freshwater planktic heterocytous cyanobacteria - Hydrobiologia 698: 327-351. Go to original source...
  8. Komárek, J. & Komárková-Legnerová, J. (2007): Taxonomic evaluation of cyanobacterial microflora from alkaline marshes of northern Belize. 1. Phenotypic diversity of coccoid morphotypes. - Nova Hedwigia 84: 65-111. Go to original source...
  9. Komárek, J. & Hauer, T. (2012): CyanoDB.cz - On-line database of cyanobacterial genera. - Word-wide electronic publication, Univ. of South Bohemia & Inst. of Botany AS CR, http://www.cyanodb.cz.
  10. Komárek, J.; Komárková, J.; Ventura, S. & Turicchia, S. (2005): Comparison of phenotype and molecular diversity of cyanobacteria from alkaline marshes in Belize (Central America). - Phycologia 44: 55-56. Go to original source...
  11. Komárková, J.; Jezberová, J.; Komárek, O. & Zapomělová, E. (2010): Variability of Chroococcus (Cyanobacteria) morphospecies with regard to phylogenetic relationships. - Hydrobiologia 639: 69-83. Go to original source...
  12. McNeill, J.; Barrie, F.R.; Buck, W.R.; Demoulin, V.; Greuter, W.; Hawksworth, D.L.; Herendeen, P.S.; Knapp, S.; Marhold, K.; Prado, J.; Proud´homme van Reine, W.F.; Smith, G.W.; Wiersema, J.H. & Turland, N.J. (eds) (2012): International Code of Nomenclature for Algae, Fungi and Plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. - Regnum Vegetabile 154: 1-240.
  13. Nübel, U.F.; Garcia-Pichel, P. & Muyzer, G. (1997): PCR primers to amplify 16S rRNA genes from cyanobacteria. - Applied and Environmental Microbiology 63: 3327-3332. Go to original source...
  14. Posada, D. (2008): Model Test: phylogenetic model averaging. - Molecular Biology and Evolution 25:1253-6. Go to original source...
  15. Rejmánková, E. & Komárková, J. (2000): A function of cyanobacterial mats in phosphorus-limited tropical wetlands. - Hydrobiologia 431: 135-153. Go to original source...
  16. Rejmánková, E.; Komárek, J. & Komárková, J. (2004): Cyanobacteria - a neglected component of biodiversity: patterns of species diversity in inland marshes of northern Belize (Central America). - Diversity and Distributions 10: 189-199. Go to original source...
  17. Rejmánková, E. & Komárková, J. (2005): Response of cyanobacterial mats to nutrient and salinity changes. - Aquatic Botany 83: 87-107. Go to original source...
  18. Saitou, N. & Nei, M. (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. - Molecular Biology and Evolution 4: 406-425.
  19. Sihvonen, L.M.; Lyra, C.; David, P.; Fewer, D.P.; Rajaniemi- Wacklin, P.; Lehtimäki, J.M.; Wahlsten, M. & Sivonen, K. (2007): Strains of the cyanobacterial genera Calothrix and Rivularia isolated from the Baltic Sea display cryptic diversity and are distantly related to Gloeotrichia and Tolypothrix. - FEMS Microbiology Ecology 61: 74-84. Go to original source...
  20. Stanier, R.Y.; Kurisawa, R.; Mandel, R. & Cohen-Bazire, G. (1971): Purification and properties of unicellular blue-green algae (order Chroococcales). - Bacteriological Review 35: 171-205. Go to original source...
  21. Swofford, D.L., (2003): PAUP*. Phylogenetic Analysis Using Parsimony (and other methods). - Version 4b10. Sunderland, MA: Sinauer Associates.
  22. Taton, A.; Grubisic, S.; Brambilla, E.; De Wit, R. & Wilmotte, A. (2003): Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurdo dry valleys, Antarctica) - A morphological and molecular approach. - Applied and Environmental Microbiology 69: 5157-5169. Go to original source...
  23. Turicchia, S.; Ventura, S.; Komárková, J. & Komárek, J. (2009): Taxonomic evaluation of cyanobacterial microflora from alkaline marshes of northern Belize. 2. Diversity of oscillatorialean genera. - Nova Hedwigia 89: 165-200. Go to original source...
  24. Wilmotte, A. & Herdman, M. (2001): Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences. - In: Boone D.R. & Castenholz R.W. (eds): Bergey's Manual of Systematic Bacteriology, Vol. 1. - pp. 487-493. Springer, New York. Go to original source...
  25. Wilmotte, A.; Van der Auwera, G. & De Wachter, R. (1993). Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518, and phylogenetic analysis. - FEBS Microbiological Letters 317: 96-100. Go to original source...