Fottea 14(1): 53-62, 2014 | DOI: 10.5507/fot.2014.004

Planktochlorella nurekis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid green alga carrying significant biotechnological potential.

Pavel ©kaloud*,1, Yvonne Nìmcová1, Jaromír Pytela2, Nikolay I. Bogdanov3, Christina Bock4, Sam H. Pickinpaugh2
1 Department of Botany, Charles University in Prague, Benátská 2, Praha 2, 12801 Czech Republic
2 Key Industry Engineering s.r.o., Mojmírova 1710/15, Praha 4, 14000, Czech Republic
3 Penza Agricultural Research Institute, Penza oblast, 442731, Russia
4 Faculty of Biology, University of Essen, Essen, 45141, Germany

Phylogenetic position, morphology and ultrastructure were investigated for biotechnologically remarkable strain Chlorella vulgaris IFR C-111, utilized in various commercial applications. Molecular phylogenetic analyses based on the SSU and ITS rDNA data revealed that the strain IFR C-111 forms a distinct lineage within the Parachlorella-clade in Chlorellaceae. We describe this organism as a new genus and species, Planktochlorella nurekis. Vegetative cells of this newly recognized species are spherical, possessing a single pot-shaped chloroplast with starch-covered pyrenoid. Asexually it reproduces by the formation of 2-16(-32) autospores. Cell wall is composed of two layers, the outer layer containing extended microfibrillar material. The fuzzy cell wall structure improves the buoyancy resulting in low sedimentation rate of P. nurekis. To resolve the phylogenetic position of Planktochlorella and its relationship to the closely related genera, nucleotide saturation present in the ITS rDNA data was reduced by four different approaches. The resulting topologies pointed to the poor phylogenetic signal in generally utilized SSU and ITS rDNA data and the need of sequencing other molecular markers.

Keywords: biotechnology, Chlorella, green algae, nucleotide saturation, phylogeny, taxonomy, Trebouxiophyceae, ultrastructure

Received: May 1, 2013; Accepted: August 26, 2013; Published: March 1, 2014  Show citation

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©kaloud, P., Nìmcová, Y., Pytela, J., Bogdanov, N.I., Bock, C., & Pickinpaugh, S.H. (2014). Planktochlorella nurekis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid green alga carrying significant biotechnological potential. Fottea14(1), 53-62. doi: 10.5507/fot.2014.004
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References

  1. Andersen, R. A.; Berges, J. A.; Harrison, P. J. & Watanabe, M. M. (2005): Recipes for freshwater and seawater media. - In: Andersen, R. A. (ed.): Algal culturing techniques. - pp. 429-538, Elsevier Academic Press. Go to original source...
  2. Arbogast, B.; Edwards, S. V.; Wakeley, J.; Beerli, P. & Slowinski, J. B. (2002): Estimating divergence time from molecular data on phylogenetic and population genetic timescales. - Annu. Rev. Ecol. Syst. 33: 707-740. Go to original source...
  3. Bock, C.; Pröschold, T. & Krienitz, L. (2010): Two new Dictyosphaerium-morphotype lineages of the Chlorellaceae (Trebouxiophyceae): Heynigia gen. nov. and Hindakia gen. nov. - Europ. J. Phycol. 45: 267-277. Go to original source...
  4. Bock, C.; Krienitz, L. & Pröschold, T. (2011a): Taxonomic reassessment of the genus Chlorella (Trebouxiophyceae) using molecular signatures (barcodes), including description of seven new species. - Fottea 11: 293-312. Go to original source...
  5. Bock, C.; Pröschold, T. & Krienitz, L. (2011b): Updating the genus Dictyosphaerium and description of Mucidosphaerium gen. nov. (Trebouxiophyceae) based on morphological and molecular data. - J. Phycol. 47: 638-652. Go to original source...
  6. Bogdanov, N. I. (2007): Biological Basis of Preventing "Bloom" of the Penza Reservoir by Blue-Green Algae. - Penza, RIO PGSChA, 75 pp. (in Russian)
  7. Bogdanov, N. I. (2008): Biological rehabilitation of waters. - 125 pp., Penza, RIO PGSChaA, Available from http://www.chlorella-v.narod.ru/Sea.pdf (in Russian)
  8. Brunnthaler, J. (1913): Die systematische Gliederung der Protococcales (Chlorophyceae). - Verh. K. K. Zool. - Bot. Ges. Wien 63:76-91. Go to original source...
  9. Castresana, J. (2000): Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. - Mol. Biol. Evol. 17: 540-552. Go to original source...
  10. Darienko, T.; Gustavs, L.; Mudimu, O.; Menendez, C. R.; Schumann, R.; Karsten, U.; Friedl, T. & Pröschold, T. (2010): Chloroidium, a common terrestrial coccoid green alga previously assigned to Chlorella (Trebouxiophyceae, Chlorophyta). - Eur. J. Phycol. 45: 79-95. Go to original source...
  11. Fuèíková, K.; Flechtner, V. R. & Lewis, L. A. (2012): Revision of the genus Bracteacoccus Tereg (Chlorophyceae, Chlorophyta) based on a phylogenetic approach. - Nova Hedwigia 96: 15-59. Go to original source...
  12. Hall, J. D.; Fuèíková, K.; Lo, C.; Lewis, L. L. & Karol, K. G. (2010): An assessment of proposed DNA barcodes in freshwater green algae. - Cryptogam. Algol. 31: 529-555.
  13. Hanagata, N. (1998): Phylogeny of the subfamily Scotiellocystoideae (Chlorophyceae, Chlorophyta) and related taxa inferred from 18S ribosomal RNA gene sequence data. - J. Phycol. 34: 1049-1054. Go to original source...
  14. Hegewald, E. & Hanagata, N. (2000): Phylogenetic studies on Scenedesmaceae (Chlorophyta). - Algological Studies 100: 29-49. Go to original source...
  15. Hepperle, D. (2004): SeqAssem©. A sequence analysis tool, contig assembler and trace data visualization tool for molecular sequences. (http://www.sequentix.de).
  16. Huss, V. A. R.; Frank, C.; Hartmann, E. C.; Hirmer, M.; Kloboucek, A.; Seidel, B. M.; Wenzeler, P. & Kessler, E. (1999): Biochemical taxonomy and molecular phylogeny of the genus Chlorella sensu lato (Chlorophyta). - J. Phycol. 35: 587-598. Go to original source...
  17. Kalina, T. & Punèocháøová, M. (1987): Taxonomy of the subfamily Scotiellocystoideae Fott 1976 (Chlorellaceae, Chlorophyceae). - Arch. Hydrobiol. Suppl. / Algological Studies 45: 473-521.
  18. Katana, A.; Kwiatowski, J.; Spalik, K.; Zakrys, B.; Szalacha, E. & Szymanska, H. (2001): Phylogenetic position of Koliella (Chlorophyta) as inferred from nuclear and chloroplast small subunit rDNA. - J. Phycol. 37: 443-451. Go to original source...
  19. Katoh, K.; Kuma, K.; Toh, H. & Miyata, T. (2005): MAFFT version 5: improvement in accuracy of multiple sequence alignment. - Nucleic Acids Res. 33: 511- 518. Go to original source...
  20. Komárek, J. & Fott, B. (1983): Chlorophyceae (Grünalgen) Ordnung: Chlorococcales. Das Phytoplankton des Süsswassers. - In: Huber-Pestalozzi, G. (ed.): Die Binnengewässer XVI., 7/1. - 1044 pp., Schweizerbart'sche, Stuttgart.
  21. Krienitz, L.; Bock, C.; Kotut, K. & Pröschold, T. (2012): Genotypic diversity of Dictyosphaerium- morphospecies (Chlorellaceae, Trebouxiophyceae) in African inland waters, including the description of four new genera. - Fottea 12: 231-253. Go to original source...
  22. Krienitz, L.; Bock, C.; Luo, W. & Pröschold, T. (2010): Polyphyletic origin of the Dictyosphaerium- morphotype within Chlorellaceae (Trebouxiophyceae). - J. Phycol. 46: 559-563. Go to original source...
  23. Krienitz, L.; Hegewald, E. H.; Hepperle, D.; Huss, V. A. R.; Rohr, T. & Wolf, M. (2004): Phylogenetic relationship of Chlorella and Parachlorella gen. nov. (Chlorophyta, Trebouxiophyceae). - Phycologia 43: 529-542. Go to original source...
  24. Kruzhilin, I. P. & Bogdanov, N. I. (2009): Use of Chlorella vulgaris strain BIN for biological rehabilitation of wastewaters and polluted water bodies. - Russ. Agric. Sci. 35: 405-407. Go to original source...
  25. Löytynoja, A.; Milinkovitch, M. C. (2001): SOAP, cleaning multiple alignments from unstable blocks. - Bioinformatics 17: 573-574. Go to original source...
  26. Luo, W.; Pflugmacher, S.; Pröschold, T.; Walz, N. & Krienitz, L. (2006): Genotype versus phenotype variability in Chlorella and Micractinium (Chlorophyta, Trebouxiophyceae). - Protist 157: 315-333 Go to original source...
  27. Luo, W.; Pröschold, T.; Bock, C. & Krienitz, L. (2010): Generic concept in Chlorella-related coccoid green algae (Chlorophyta, Trebouxiophyceae). - Plant Biol. 12: 545-553. Go to original source...
  28. Merchant, R. E. & Andre, C. A. (2001): A review of recent clinical trials of the nutritional supplement Chlorella pyrenoidosa in the treatment of fibromyalgia, hypertension, and ulcerative colitis. - Altern. Therap. Health Med. 7: 79-91.
  29. Moreira, D. & Philippe, H. (2000): Molecular phylogeny: pitfalls and progress. - Internatl. Microbiol. 3: 9-16.
  30. Neustupa, J.; Nìmcová, Y.; Eliá¹, M. & ©kaloud, P. (2009): Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. - Phyc. Res. 57: 159-169. Go to original source...
  31. Nylander, J. A. A. (2004): MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. Available from http://www.abc.se/~nylander/.
  32. Reynolds, C. S. (2007): Variability in the provision and function of mucilage in phytoplankton: facultative responses to the environment. - Hydrobiologia 578: 37-45. Go to original source...
  33. Rindi, F.; Allali, H. A.; Lam, D. W. & Lopez-Bautista, J. M. (2010): An overview of the biodiversity and biogeography of terrestrial green algae. - In: Rescigno, V. & Maletta, S. (eds): Biodiversity Hotspots. - pp. 105-122, Nova Science Publishers, Hauppauge, New York.
  34. Ronquist, F. & Huelsenbeck, J. P. (2003): MrBayes 3: Bayesian phylogenetic inference under mixed models. - Bioinformatics 19: 1572-1574. Go to original source...
  35. ©kaloud, P. & Rindi, F. (2013): Ecological differentiation of cryptic species within an asexual protist morphospecies: A case study of filamentous green alga Klebsormidium (Streptophyta). - J. Euk. Microbiol., in press. Go to original source...
  36. Spolaore, P.; Joannis-Cassan, C.; Duran, E.; Isambert, A. (2006): Commercial Applications of Microalgae. - J. Biosci. Bioeng. 101: 87-96. Go to original source...
  37. Spurr, A. R. (1969): A low viscosity epoxy resin embedding medium for electron microscopy. - J. Ultrastruct. Res. 26: 31-43. Go to original source...
  38. Swofford, D. L. (2002): PAUP*. Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4, Sinauer Associates, Sunderland, Massachusetts.
  39. Ustinova, I.; Krienitz, L. & Huss, V. A. R. (2001): Closteriopsis acicularis (G. M. Smith) Belcher et Swale is a fusiform alga closely related to Chlorella kessleri Fott et Nováková (Chlorophyta, Trebouxiophyceae). - Eur. J. Phycol. 36: 341-351. Go to original source...
  40. van Donk, E.; Lürling, M. & Lampert, W. (1999): Consumer- induced changes in phytoplankton: Inducibility, costs, benefits and impacts on grazers. - In: Tollrian, R. & Harvell, C. D. (eds): The Ecology and Evolution of Inducible Defenses. - pp. 89-103, Princeton Univ. Press, Priceton, New Jersey. Go to original source...
  41. White, T. J.; Bruns, T.; Lee, S. & Taylor, J. (1990): Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. - In: Innis, M. A.; Gelfand, D. H.; Sninsky, J. J. & White, T. J. (eds): PCR Protocols: a guide to methods and applications. - pp. 315-322, Academic Press, New York. Go to original source...
  42. Wolf, M.; Krienitz, L.; Hepperle, D. (2002): Phylogenetic position of Actinastrum hantzschii Lagerheim 1882 (Chlorophyta, Trebouxiophyceae). - Arch. Hydrobiol. Suppl. / Algological Studies 104: 59-67. Go to original source...
  43. Yamaguchi, K. (1997): Recent advances in microalgal bioscience in Japan, with special reference to utilization of biomass and metabolites: a review. - J. Appl. Phycol. 8: 487-502. Go to original source...
  44. Zwickl, D. J. (2006): Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. World-wide electronic publication, The University of Texas, Austin. Available from http://www.bio.utexas.edu/faculty/antisense/garli/Garli.html.