Fottea 2017, 17(1):20-33 | DOI: 10.5507/fot.2016.011
Taxonomic status of Chara tenuspina A. Br. (Streptophyta: Charales) based on LM morphology, matK, atpB and rbcL of cpDNA sequences
- 1 Department of Botany and Plant Ecology, Wroc³aw University of Environmental and Life Sciences, pl. Grunwaldzki 24a , 50-363 Wroc³aw, Poland; *Corresponding author e-mail: jacek.urbaniak@uap.wroc.pl
- 2 W. Szafer Institute of Botany, Polish Academy of Science, ul. Lubicz 46, 31-512, Kraków, Poland
Chara tenuispina A. Br. is an extremely rare species of the genus Chara L., which inhabits freshwater and shaded, shallow water environments on calcareous peat bogs, as compared to C. globularis Thuill., which is a widespread species. To re-examine the taxonomic system proposed by Wood & Imahori (1965), who treated C. tenuispina as a variety of C. globularis, we studied the morphology of both species, as well as their phylogenetic relationships, based on three cpDNA gene sequences (atpB, matK, rbcL). In general, the species do not differ significantly in their general appearance, but certain details, such as prolonged stipulodes in upper rows below the branchlet, or the extremely long spine cells in C. tenuispina, may be noted as distinguishing characteristics. In addition, the results of sequence analysis demonstrated that these species are phylogenetically separated, forming distinct clades. This supports the taxonomic interpretation that C. tenuispina is a distinct species rather than variety of C. globularis.
Keywords: Chara tenuispina, Chara globularis, charophytes, dimensions, Europe, morphology, molecular, phylogeny, taxonomy
Received: January 4, 2016; Accepted: April 6, 2016; Prepublished online: January 4, 2017; Published: April 1, 2017 Show citation
References
- Abascal, F.; Zardoya, R. & Telford, M.J. (2010): TranslatorX, multiple alignment ofnucleotide sequences guided by amino acid translations. - Nucleic Acids Research 38: W7 - 13.
Go to original source... - Braun, A. & Nordsteadt, C.F.O. (1882): Fragmente einer Monographie der Characeen. Nach den hinterlassenden Manuscripten A. Braun's. - Abhandlungen der Königlichen Akademie der Wissenschaften zu Berlin, Physikalisch-Mathematische Klasse 1882: 1-221.
- Cirujano, S.; Cambra, J.; Sanchez-Castillo, P.M.; Meco, A. & Flor-Arnau, N. (2008): Carofitos (Characeae). - In: Cirujano, S. (ed.): Flora ibérica. Algas continentales. - 132 pp., Real Jardín Botánico, Madrid.
- Corillion, R. (1957): Les Charophycées de France et d'Europe Occidentale. - 499 pp., Imprimerie Bretonne, Rennes.
- Edgar, R.C. (2004a): MUSCLE, a multiple sequence alignment method with reduced time and space complexity. - BMC Bioinformatics 5: 113.
Go to original source... - Edgar, R.C. (2004b): MUSCLE, multiple sequence alignment with high accuracy and high throughput. - Nucleic Acids Research 32: 1792 - 1797.
Go to original source... - Felsenstein, J. (1985): Confidence limits on phylogenies, an approach using bootstrap. -Evolution 38: 16 - 24.
Go to original source... - Groff, P.A.; Hale, A.M. & Whitlock, B.A. (2015): Chloroplast Lineages in Disjunct Western North American Populations of Swertia perennis (Gentianaceae). - Systematic Botany 40: 220 - 228.
Go to original source... - Groves, J. & Bullock-Webster, G.R. (1924): The British Charophyta. Vol. II. Chareae with plates, concluding articles, geological sketch, bibliography and index. - 129 pp., Ray Society, London.
- Guindon, S. & Gascuel, O. (2003): A simple, fast, and accurate algorithm to estimate largephylogenies by maximum likelihood. - Systematic biology 52: 696-704.
Go to original source... - Guiry, M.D. & Guiry, G.M. (2012): AlgaeBase. World-wide electronic publication. - National University of Ireland, Galway. http://www.algaebase.org; searched on 23 November 2015
- Hoot, S.B. (1995): Phylogeny of the Ranunculaceae based on preliminary atpB, rbcL and 18S nuclear ribosomal DNA sequence data. - Plant Systematics and Evolution 9: 241-251.
Go to original source... - Hoot, S.B.; Culham, A. & Crane, P.R. (1995): The utility of atpB gene sequences in resolving phylogenetic relationships: Comparison with rbcL and 18S ribosomal DNA sequences in the Lardizabalaceae. - Annals of the Missouri Botanical Garden 82: 194-207.
Go to original source... - Jukes, T.H. & Cantor, C.R. (1969): Evolution of protein molecules. - In: Munro, M.N. (ed.): Mammalian Protein Metabolism. - pp. 21-132, Academic Press, New York, USA.
Go to original source... - Karol, K.G.; McCourt, R.M.; Cimino, M.T. & Delwiche, C.F. (2001): The closest living relatives of land plants. - Science 294: 2351-2353.
Go to original source... - Krause, W. (1997): Charales (Charophceae). - In: ETTL, H.; GÄRTNER, G.; HEYNIG, H. & MOLLENHAUER, D. (eds): Süßwasserflora von Mitteleuropa, Band 18. - 202 pp., Gustav Fischer Verlag, Stuttgart - Jena.
- Mannchreck, B.; Fink, T. & Melzer, A. (2002): Biosystematics of selected Chara species (Charophyta) using amplified fragment length polymorphism. - Phycologia 41: 657-666.
Go to original source... - Mattox, K.R & Stewart, K.D. (1984): Classification of the green algae: a concept based on comparative cytology. - In: Irvine, D.E.G. & John, D.M. (eds): The Systematics of green algae. - pp. 29-72, Academic Press, London.
- Meiers, S.T.; Proctor, W.V. & Chapman, R.L. (1999): Phylogeny and biogeography of Chara (Charophyta) inferred from 18S rDNA sequences. - Australian Journal of Botany 47: 347-360.
Go to original source... - McCourt, R.M.; Karol, K.G.; Guerlesquin, M. & Feist, M. (1996). Phylogeny of extant genera in the family Characeae (Charales, Charophyceae) based on rbcL sequences and morphology. - American Journal of Botany 83: 125-131.
Go to original source... - McCourt, R.M.; Casanova, M.T.; Karol, K.G. & Feist, M. (1999): Monophyly of Genera and Species of Characeae based on rbcL Sequences, with Special Reference to Australian and European Lychnothamnus barbatus Leonh. (Characeae: Charophyceae). - Australian Journal of Botany 47: 361-369.
Go to original source... - Migula, W. (1897): Die Characeen Deutschlands, Österreichs und der Schweiz. In: Rabenhorst, L. (ed.): Kryptogamen Flora von Deutschland, Österreich und der Schweiz, Vol. 5. - 765 pp., Eduard Kummer, Leipzig.
- Romanov, R.E.; Gontcharov, A.A & Barinova, S.S. (2015). Chara globata Mig. (Streptophyta: Charales): rare species revised. - Fottea 15: 39-50.
Go to original source... - Nylander, J.A.A.; Ronquist, F.; Huelsenbeck, J.P. & Nieves-Aldrey, J.L. (2004): Bayesian phylogenetic analysis of combined data. - Systematic biology 53: 47 - 67.
Go to original source... - Olsen, S. (1944): Danish Charophyta. Chorological, ecological and biological investigations. Kongelige Danske Videnskabernes Selskabs. - Biologiske Skrifter 3: 1-240.
- O'Reilly, C.L.; Cowan, R.S. & Hawkins, A.A. (2007): Amplified fragment length polymorphism genetic fingerprinting challenges the taxonomic status of the near - endemic species Chara curta Nolte ex Kütz. (Characeae). - Botanical Journal of the Linnean Society. 155: 467-476.
Go to original source... - Rindi, F.; McIvor, L. & Guiry, M.D. (2004): The prasiolales (Chlorophyta) of atlantic Europe: An assessment based on morphological, molecular, and ecological data, including the characterization of Rosenvingiella radicans (Kützing) comb. nov. - Journal of Phycology 40: 977-997.
Go to original source... - Ronquist, F. & Huelsenbeck, J.P. (2003): MrBayes 3. Bayesian phylogenetic inference under mixed models. - Bioinformatics 19: 1572-1574.
Go to original source... - Saito, N. & Nei, M. (1987): The neighbor - joining method, a new method for reconstruction phylogenetic trees. - Molecular Biology and Evolution 4: 406-425.
- Sakayama, H.; Hara, Y. & Nozaki, H. (2004): Taxonomic re-examination of six species of Nitella (Charales, Charophyceae) from Asia, and phylogentical relationships within the genus based on rbcL and atpB gene sequences. - Phycologia 43: 91-104.
Go to original source... - Sakayama, H.; Kasai, F.; Nozaki, H.; Watanabe, M.M.; Kawachi, M.; Shigyo, M.; Nishihiro, J.; Washitani, I. & Krienitz, L. (2009): Taxonomic reexamination of Chara globularis Thuill. (Charales, Charophyceae) from Japan based on oospore morphology and rbcL gene sequences, and the description of C. leptospora sp. nov. - Journal of Phycology 45: 917-927.
Go to original source... - Sakayama, H.; Nozaki, H.; Kasaki, H. & Hara, Y. (2002): Taxonomic re - examination of Nitella (Charales, Charophyceae) from Japan, based on microscopical studies of oospore wall ornamentation and rbcL gene sequences. - Phycologia 41: 397-408.
Go to original source... - Sanders, E.R.; Karol, K.G. & McCourt, R.M. (2003): Occurrence of matK in and trnK group II intron in charophyte green algae and phylogeny of the Characeae. - American Journal of Botany 90: 628-633.
Go to original source... - Schneider, S.; Ziegler, C. & Melzer, A. (2006): Growth towards light as an adaptation to high light conditions in Chara branches. - New Phytologist 172: 83-91.
Go to original source... - StatSoft, Inc. (2014). STATISTICA (data analysis software system), version 12. Tulsa.
- Swofford, D.L. (2002): PAUP* - Phylogenetic Analysis Using Parsimony (* and other methods), version 4.0b10. - Sinauer Associates, Sunderland, MA, USA.
- Tanabe, A.S. (2011): Kakusan4 and Aminosan, two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data. - Molecular Ecology Resources 11: 914-921.
Go to original source... - Thompson, J.D.; Higgins, D.G. & Gibson, T.J. (1994): CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. - Nucleic Acids Research 22: 4673-4680.
Go to original source... - Thiers, B. (2013): Index Herbariorum: A global directory of public herbaria and associated staff. - New York Botanical Garden's Virtual Herbarium. http://sweetgum.nybg.org/science/ih/; searched on 23 November 2015.
- Turmel, M.; Otis, C. & Lemieux, C. (2006): The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants. - Molecular Biology and Evolution 23: 1324-1338.
Go to original source... - Urbaniak, J. (2007): Distribution of Chara braunii Gmelin 1826 (Charophyta) in Poland. - Acta Societatis Botanicorum Poloniae 76: 313 - 320.
Go to original source... - Urbaniak, J. (2009): Oospore variation in Nitella gracilis and Nitella mucronata (Charales, Charophyceae) from Poland. - Biologia 64: 252-260.
Go to original source... - Urbaniak, J. (2010): Analysis of morphological characters of Chara baltica Bruz., C. hispida L, C. horrida Wahlst. and C. rudis A.Br. from Europe. - Plant Systematics and Evolution 286: 209-221.
Go to original source... - Urbaniak, J. (2011a): An SEM and light microscopy study of the oospore wall ornamentation in Polish charophytes (Charales, Charophyceae) - genus Chara. - Nova Hedvigia 93: 1-28.
Go to original source... - Urbaniak, J. (2011b): An SEM study of the oospore wall ornamentation in Polish charophytes (Charales, Charophyceae) - genus Lychnothamnus, Nitella and Nitellopsis. - Nova Hedvigia 93: 537-549.
Go to original source... - Urbaniak, J. & Bla¾enciè, J. (2012): SEM study of oospore characteristics in endemic and endangered Balkan Charophytes. - Cryptogamie, Algologie 33: 277-288.
Go to original source... - Urbaniak, J.; Langangen, A. &Van Raam, J. (2012): Oospore Wall Ornamentation in the Genus Tolypella (Charales, Charophyceae). - Journal of Phycology 48: 1538-1545.
Go to original source... - Urbaniak, J. & Combik, M. (2013): Genetic and morphological data fail to differentiate Chara intermedia A.Br. from C. baltica Bruz., or C. polyacantha A.Br. and C. rudis A.Br. from C. hispida L. - European Journal of Phycology 48: 253-259.
Go to original source... - Urbaniak, J. & G±bka, M. (2014): Polish Charophytes. An illustrated guide to identification. - 120 pp., Wydawnictwo Uniwersytetu Przyrodniczego we Wroc³awiu, Wroc³aw.
- Wood, R.D. (1962): New combinations and taxa in the revision of Characeae. - Taxon 11: 7-25.
Go to original source... - Wood, R.D. & Imahori, K.A. (1965): Monograph of the Characeae. - In: Wood, R.D & Imahori, K. (eds): A revision of the Characeae . - 904 pp., J. Cramer Verlag, Weinheim.



